resampleR: a procedural script for resampling features in R
Apr 17, 2024
Resampling · Biased groups · Biostatistics · R
A short script that lays out a complete resampling approach for unbiased data analysis. Data from R's ratdat library is used for demonstration.
FastQC processor: a script that automates quality control of fastq files in bulk and outputs pre-trimmed FastQC reports
Sep 19, 2023
HPC · BASH · QC · fastqc · Unix/Linux · CLI · Bioinformatics
A script that efficiently processes multiple '.fastq' files, automatically organizing the pre-trimmed output into a folder named 'qc_reports_pretrim' for a streamlined sequencing quality control analysis.
CCLE-based and literature-informed classifier for the sex classification of cancer cell lines using gene counts data
Nov 25, 2023
CCLE · Cancer · Gene counts · Classifier · XIST · X-linked · Y-linked · R-language
This is a prototype for a classifier that predicts sex and genotype of cancer cell lines from sequenced read counts. The classifier was tested on data from the Cancer Cell Line Encyclopedia (CCLE).
Can differential gene expression of MDA-MB-231 cell line on GEO2R inform about metastatic genes?
Nov 19, 2023
Cancer · Metastasis · Transcriptomics · Cell lines · Biostatistics · GEO2R · R-language
A systematic approach in using GEO2R for investigating gene expression differences between a low-metastatic group and the highly metastatic MDA-MB-231 (TNBC) human breast cancer cell lines.
4th order ODE models for free vibrating beams with inverse solvers using spectral methods
Feb 14, 2019
MATLAB · Models · Simulations · ODEs · Spectral methods · Numerical solvers
A set of developed prototypes based on Pseudo Spectral methods for the dynamic analysis and simulation of non-Ideal one-dimensional cantilevers and fixed beams.
